These fluffy cottage cheese almond flour bagels deliver authentic bagel texture without traditional wheat flour, making them perfect for low-carb and gluten-free lifestyles. The secret lies in combining protein-rich cottage cheese with finely ground almond flour to create a dough that bakes into surprisingly tender, chewy bagels. This innovative recipe produces bakery-quality results in just 35 minutes, transforming simple ingredients into satisfying breakfast favorites that rival traditional bagels.
Recipe Details
Prep Time: 15 mins
Cook Time: 20 mins
Total Time: 35 mins
Servings: 8 bagels
Difficulty: Easy
Table of Contents
Ingredients
For the Bagels:
- 2 cups super fine almond flour
- 1 cup full-fat cottage cheese, room temperature
- 2 large eggs, room temperature
- 1 teaspoon baking powder
- 1 teaspoon garlic powder
- 1/2 teaspoon onion powder
- 1 teaspoon salt
- 1/4 teaspoon black pepper
For the Egg Wash and Toppings:
- 1 large egg, beaten
- 1 tablespoon water
- 2 tablespoons everything bagel seasoning
- 1 tablespoon sesame seeds
- 1 tablespoon poppy seeds
- 1 teaspoon coarse sea salt

Instructions
- Preheat and prepare: Preheat oven to 375°F (190°C). Line a large baking sheet with parchment paper and lightly spray with cooking oil to prevent sticking.
- Blend the cottage cheese: Place cottage cheese in a food processor and pulse for 30-45 seconds until mostly smooth with only small curds remaining. This creates the ideal texture for fluffy bagels without making the dough too wet.
- Mix wet ingredients: In a large mixing bowl, whisk together the processed cottage cheese and 2 eggs until well combined and slightly frothy, about 1 minute of vigorous whisking.
- Combine dry ingredients: In a separate bowl, whisk together almond flour, baking powder, garlic powder, onion powder, salt, and black pepper until evenly distributed with no lumps.
- Form the dough: Add dry ingredients to the cottage cheese mixture, stirring with a wooden spoon until a soft, slightly sticky dough forms. The dough should hold together when squeezed but remain pliable. Let rest for 3 minutes to allow almond flour to hydrate.
- Shape the bagels: Divide dough into 8 equal portions using a kitchen scale for best results (about 2.5 ounces each). Roll each portion into a smooth ball, then use your thumb to create a hole in the center. Gently stretch the hole to about 1.5 inches in diameter, creating the classic bagel shape.
- Apply toppings: Whisk together beaten egg and water for the egg wash. Brush each bagel generously with egg wash, ensuring complete coverage for golden browning. Sprinkle with desired toppings, pressing gently so they adhere during baking.
- Bake to perfection: Place bagels on the prepared baking sheet, spacing them 2 inches apart. Bake for 18-22 minutes until golden brown and firm to the touch. The internal temperature should reach 190°F (88°C) when tested with an instant-read thermometer.
- Cool and serve: Transfer to a wire rack and cool for at least 10 minutes before slicing. The bagels will continue to firm up as they cool, developing the perfect chewy texture.
Tips for Success
Cottage cheese consistency: Use full-fat cottage cheese for the richest flavor and best texture. Low-fat versions create denser bagels with less satisfying mouthfeel.
Almond flour quality: Super fine almond flour produces the smoothest texture. If using regular almond flour, pulse it in a food processor for 30 seconds to achieve finer consistency.
Dough handling: The dough will be softer than traditional bagel dough. Lightly wet your hands when shaping to prevent sticking, but avoid adding extra flour which makes bagels dense.
Even baking: Rotate the baking sheet halfway through cooking time for uniform golden browning on all bagels.
Storage secret: Store cooled bagels in an airtight container at room temperature for 2 days, or freeze individually wrapped for up to 3 months.
Recipe Variations
Sweet cinnamon version: Replace garlic and onion powder with 1 teaspoon cinnamon and 2 tablespoons erythritol or stevia. Top with cinnamon sugar before baking.
Herb and cheese: Fold in 1/4 cup grated Parmesan cheese and 1 tablespoon dried Italian herbs into the dough before shaping.
Jalapeño cheddar: Add 2 tablespoons diced pickled jalapeños and 1/4 cup shredded sharp cheddar to the dough for spicy, cheesy bagels.
Plain version: Omit garlic and onion powder for neutral-flavored bagels perfect for sweet or savory toppings.
Storage Instructions
These fluffy cottage cheese almond flour bagels maintain freshness when stored properly in an airtight container at room temperature for up to 2 days. For longer storage, slice bagels in half and freeze in freezer bags for up to 3 months.
To refresh day-old bagels, toast them lightly or warm in a 300°F (150°C) oven for 5 minutes. Frozen bagels can be toasted directly from frozen, adding 1-2 minutes to normal toasting time.
Nutritional Highlights
Each bagel provides approximately 12 grams of protein and only 6 grams of net carbs, making them ideal for low-carb and ketogenic diets. The combination of cottage cheese and almond flour delivers complete proteins, healthy fats, and essential minerals including calcium and vitamin E.
Unlike traditional bagels made with refined wheat flour, these cottage cheese almond flour bagels offer sustained energy without blood sugar spikes, making them perfect for diabetic-friendly meal planning.
Serving Suggestions
Serve these versatile bagels with classic cream cheese and lox for an elegant brunch, or toast and top with avocado and everything seasoning for a nutritious breakfast. They pair beautifully with scrambled eggs, smoked salmon, or your favorite bagel sandwich fillings.
For sweet applications, try them with sugar-free jam, almond butter and sliced strawberries, or cream cheese mixed with vanilla extract and stevia. The neutral flavor profile makes them adaptable to both sweet and savory preparations.
These fluffy cottage cheese almond flour bagels prove that healthy eating doesn’t require sacrificing beloved breakfast traditions. With their tender crumb and satisfying chew, they’ll become a regular feature in your low-carb baking repertoire.