These decadent caramel cheesecake cookies combine the best of two beloved desserts in one irresistible bite-sized treat. Each cookie features a buttery graham cracker base, a creamy cheesecake center, and a luscious caramel topping that creates the perfect balance of textures and flavors. While they look bakery-elegant, these cookies use simple techniques that home bakers can master, making them ideal for special occasions or whenever you want to impress with minimal fuss.
Recipe Details
Prep Time: 30 mins
Cook Time: 15 mins
Total Time: 45 mins
Servings: 24 cookies
Difficulty: Medium
Table of Contents
Ingredients
For the Cookie Base:
- 1½ cups graham cracker crumbs (about 12 crackers)
- ¼ cup granulated sugar
- 6 tablespoons unsalted butter, melted
- ¼ teaspoon salt
For the Cheesecake Filling:
- 8 ounces cream cheese, softened to room temperature
- ⅓ cup granulated sugar
- 1 large egg yolk
- 1 teaspoon vanilla extract
- 2 tablespoons all-purpose flour
For the Caramel Topping:
- ½ cup granulated sugar
- 2 tablespoons water
- 3 tablespoons heavy cream, warmed
- 2 tablespoons unsalted butter
- ¼ teaspoon sea salt
- ½ teaspoon vanilla extract

Instructions
- Prepare your workspace. Preheat oven to 350°F. Line two large baking sheets with parchment paper. Set out a 24-cup mini muffin tin for shaping the cookies.
- Make the graham base. In a medium bowl, combine graham cracker crumbs, sugar, melted butter, and salt. Mix until the mixture resembles wet sand and holds together when pressed. The texture should be similar to cheesecake crust.
- Shape the cookie bases. Press about 1 tablespoon of the graham mixture firmly into each mini muffin cup, creating a small well in the center for the filling. Use your thumb or the back of a small spoon to create even indentations.
- Pre-bake the bases. Bake for 8 minutes until the edges are lightly golden and set. Remove from oven and let cool for 5 minutes while preparing the filling.
- Prepare the cheesecake filling. In a mixing bowl, beat softened cream cheese with an electric mixer until completely smooth and fluffy, about 2 minutes. Add sugar and beat until well combined.
- Add remaining filling ingredients. Beat in egg yolk, vanilla extract, and flour until the mixture is smooth and no lumps remain. The filling should be thick but pipeable.
- Fill the cookie cups. Using a small spoon or piping bag, divide the cheesecake filling evenly among the pre-baked bases, filling each about three-quarters full. The filling will puff slightly during baking.
- Bake the filled cookies. Return to oven and bake for 12-15 minutes until the filling is set but still slightly jiggly in the center. The tops should not brown. Cool completely in the pan.
- Make the caramel sauce. In a heavy-bottomed saucepan, combine sugar and water over medium-high heat. Cook without stirring until the mixture turns deep amber, about 8-10 minutes. Swirl the pan occasionally for even cooking.
- Finish the caramel. Remove from heat and immediately whisk in warm cream (mixture will bubble vigorously). Add butter, salt, and vanilla, whisking until smooth. Let cool for 10 minutes until slightly thickened but still pourable.
- Remove cookies from pan. Carefully lift each cookie from the muffin tin using a small offset spatula or knife. Place on serving plate or storage container.
- Top with caramel. Drizzle or spoon about 1 teaspoon of caramel over each caramel cheesecake cookie. Allow caramel to set for 15 minutes before serving for the best presentation.
Tips for Success
Achieve perfect cream cheese texture. Remove cream cheese from refrigerator 2-3 hours before baking, or microwave in 15-second intervals until softened. Lumpy cream cheese will create an uneven filling texture.
Don’t overbake the filling. The cheesecake centers should still have a slight jiggle when you remove them from the oven. They’ll continue cooking from residual heat and firm up as they cool.
Master the caramel timing. Watch the sugar mixture carefully once it starts changing color. It can go from perfect amber to burnt in seconds. Have your cream ready and warmed to prevent seizing.
Use the right muffin tin. Mini muffin cups create the perfect portion size and shape. If using regular muffin tins, adjust quantities accordingly and increase baking time by 3-5 minutes.
Recipe Variations
Salted caramel version. Increase the sea salt in the caramel to ½ teaspoon and sprinkle a few flakes of flaky sea salt on top of each finished cookie for an extra flavor pop.
Chocolate base option. Replace graham crackers with chocolate wafer cookies for a richer base. Reduce sugar in the base mixture to 2 tablespoons to account for the cookies’ sweetness.
Seasonal spice twist. Add ¼ teaspoon cinnamon and ⅛ teaspoon nutmeg to the graham base for warm fall flavors. Consider drizzling with apple caramel instead of plain caramel.
Individual cheesecake bites. Skip the caramel topping and instead swirl berry jam or chocolate ganache into the filling before baking for different flavor profiles.
Storage Instructions
Room temperature storage. Store caramel cheesecake cookies in an airtight container at room temperature for up to 2 days. The caramel may soften slightly but remains delicious.
Refrigeration recommended. For best quality and food safety, refrigerate covered for up to 5 days. Bring to room temperature for 20-30 minutes before serving for optimal texture and flavor.
Make-ahead strategy. Bake the cookie bases and prepare the filling up to 2 days in advance. Store bases in airtight containers and filling covered in refrigerator. Assemble and add caramel the day of serving.
Freezing guidelines. Freeze baked cookies without caramel topping for up to 1 month. Thaw completely and add fresh caramel before serving for the best presentation.
Nutritional Highlights
These indulgent caramel cheesecake cookies provide calcium and protein from the cream cheese filling, while the graham cracker base offers whole grain benefits. Though certainly a treat, the individual portion size helps with moderation while still delivering the satisfaction of a rich dessert experience.
Each cookie contains approximately 150 calories, making them a reasonable indulgence when enjoyed as part of a balanced diet.
Serving Suggestions
Present these elegant caramel cheesecake cookies on a tiered serving stand for parties or special occasions. They pair beautifully with coffee, espresso, or dessert wine for adult gatherings. For children’s parties, serve alongside cold milk or hot chocolate.
These cookies make exceptional gifts when arranged in decorative boxes or tins. The individual serving size makes them perfect for potluck desserts, bake sales, or holiday cookie exchanges. Consider packaging them in clear containers to showcase the beautiful layered appearance.
For dinner parties, serve as petit fours alongside other small desserts for an impressive dessert table. The combination of familiar flavors in an unexpected format always generates conversation and compliments.
The sophisticated flavor profile of caramel cheesecake cookies bridges the gap between casual treats and elegant desserts. Whether you’re hosting a book club, celebrating a birthday, or simply want to treat yourself to something special, these cookies deliver bakery-quality results that will have everyone asking for your secret recipe. Don’t be surprised if these become your signature dessert – the combination of creamy cheesecake and rich caramel is simply irresistible.